Transcriptome and Metabolome Profiling Unveil Pigment Formation Variations in Brown Cotton Lines (<i>Gossypium hirsutum</i> L.).

According to top 20 DEMs, in WCF and LCF, the highly significantly up-regulated DEMs were tannin compound (lmhn000921), coumarins compound (mws1639), phenolic acids (mws0180 and pmb3062), flavonoid compounds (pmb3012 and pmb2999), and chalcone compounds (hmpn005101 and cmxn004016), while the highly significant down-regulated DEMs were flavonoid compounds (zmxp003107, hmpp002612, and zmxp002867) and coumarin compound (hmbp002498) ( Figure 2 C and Table S1 ).

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