Impact of DNA extraction, PCR amplification, sequencing, and bioinformatic analysis on food-associated mock communities using PacBio long-read amplicon sequencing.

As meat mock communities contained four different species of the genus Pseudomonas , and Faith PD takes into account phylogenetic relatedness, a highly significant difference ( p < 0.001) was detected between biofilm and meat mock communities (Fig. 2 D).

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