Harmonizome 3.0: integrated knowledge about genes and proteins from diverse multi-omics resources.

Nucleic Acids Res · 2025 · PMC11701526 · PMID 39565209

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The Harmonizome 3.0 update expands the original knowledgebase with new features that include a chatbot interface powered by a large language model (LLM), ability to cross pairs of datasets and form hypotheses about highly significant overlapping gene sets from dataset pairs, and a knowledge graph (KG) representation of the database with a user interface (UI) that visualizes associations as interactive ball-and-stick diagrams.

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