Comparative Analysis of Multi-Omics Integration Using Graph Neural Networks for Cancer Classification.

IEEE Access · 2025 · PMC11928009 · PMID 40123934

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likely to be significantno p-value reported

To identify genes that are likely to be significant for the studied biological processes, we set the p-value threshold to 0.001. 2) LIMMA We applied the LIMMA (Linear Models for Microarray) model to perform differential methylation analysis by fitting a linear model for the methylation levels of CpG sites as a function of the experimental sample groups [ 46 ].

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