What does AlphaFold3 learn about antibody and nanobody docking, and what remains unsolved?

MAbs · 2025 · PMC12360200 · PMID 40814020

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a positive trendno p-value reported

We observe a positive trend between edit distance and CDR H3 loop RMSD for antibodies for post-AF3-cutoff structures, but not for nanobodies (Figure S5A).

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