Pangenomic and Phenotypic Characterization of Colombian <i>Capsicum</i> Germplasm Reveals the Genetic Basis of Fruit Quality Traits.

Highly significant associations were identified using a strict Bonferroni-adjusted significance threshold with α = 0.05, which was based on the total number of SNPs evaluated and led to an effective threshold of −log10 = 6.14 or p -value = 7.30 × 10 −7 (= 0.05/68481) for the reference genome and −log10 = 7.75 or p -value = 1.79 × 10 −6 (= 0.05/27906) for the pangenome [ 103 ].

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