Integrated analysis of genome, metabolome, and transcriptome reveals a bHLH transcription factor potentially regulating the accumulation of flavonoids involved in carrot resistance to Alternaria leaf blight.

Identification of candidate genes Prior to gene expression analyses, we demonstrated that the differences between the susceptible genotype (H1) and the resistant genotype (I2) in the content of metabolites associated with resistance were highly significant ( Fig 3 ), which is consistent with previous observations.

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