Antibiotic treatment and source explain large, highly significant shifts in community composition when including samples collected on days 0 and 7, before and after antibiotic treatment (PERMANOVA implemented using adonis2; Antibiotics: R 2 ≈ 0.30, F = 81.7; Source: R 2 ≈ 0.17, F = 45.2; both P < 1e-5; permutations were restricted within experiments).
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Differential microbial community assembly following co-housing versus microbiota transplant.
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