When we assessed common and rare CNV categories, we once again observed highly significant differences between treated and untreated two-cell samples in common CNVs using both methods (common: P value 0.0004 for HapCNV and < 0.0001 for LUMPY, Fig. 2E; rare: P value of 0.008 for HapCNV and < 0.0001 for LUMPY, Fig. 2F ).
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Replication stress increases de novo CNVs across the malaria parasite genome.
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