Hybrid Approach to Protein-Protein Complex Affinity Prediction Based on Language Models and Molecular Dynamics.

A highly significant difference ( p < 0.0001, effect size = 0.319) is observed between protein–protein (Peptide = 0) and protein–peptide (Peptide = 1) complexes ( Figure 1 b), with a noticeably lower median affinity for the latter.

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