We speculate that the interesting patterns are those that fail to track patterns of A+T-richness; for example, repeat sequences in non-coding regions enriched for G and C are the ones more likely to be functional and understanding the components of codon bias that is not related to A+T-richness is more likely to be significant.
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Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus.
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