Evidence of recombination in intrapatient populations of hepatitis C virus.

Figure 6 shows an example of a recombination event detected by phylogenetic analysis in the E1-E2 region reflected in the incongruence (reciprocal tests with SH and ELW were highly significant, see Supplementary material) between the maximum likelihood trees derived from the two regions (delimited by nucleotides 1–264 and 265–534, respectively) defined by the breakpoints assigned to the recombination event from sample EC5703.

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