Comparing gene set analysis methods on single-nucleotide polymorphism data from Genetic Analysis Workshop 16.

BMC Proc · 2009 · PMC2796000 · PMID 20018093

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highly significantno p-value reported

Chasman [ 14 ] found that FET was more powerful for sets containing a few highly significant genes, while GSEA was more powerful for sets containing many more weakly associated genes.

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