Our GSEA analysis showed a highly significant agreement between all three platforms, since each gene set identified by any of the three platforms was found to be asymmetrically distributed within the remaining rank ordered differential gene expression datasets (GSEA FDR q-value = 0 for all comparisons) (Figure 2 ; Additional file 3 , Table S2).
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Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis.
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