By ranking all genes according to log(eye/wing) values, we found this ranking to contain a highly significant “leading edge” for eye-related Gene Ontology functions and for eye-related gene expression (using FlyBase TermLink gene sets), providing additional confirmation for accurate gene expression measurements obtained by Tag-seq ( Table 1 ; Supplemental Fig.
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Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions.
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