A simple and fast two-locus quality control test to detect false positives due to batch effects in genome-wide association studies.

Genet Epidemiol · 2010 · PMC3674525 · PMID 21104888

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highly significantno p-value reported

Unexpectedly, we found highly significant signals for pairs of SNPs in linkage disequilibrium, well beyond what might be expected for true association signals.

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