Functional organization of the genome may shape the species boundary in the house mouse.

On the 10-Mb scale, the difference was marginally significant for only the MS map (SA: LL null = 2,697, LL β = 2,698, LLR = 1.953, P = 0.3766; MS: LL null = 1,590, LL β = 1,593, LLR = 5.055; P = 0.0799; FS: LL null = −493.2, LL β = −493.0, LLR = 0.3789; P = 0.8274).

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When compared with the amount of clustering based on a randomized distribution of SNP markers the observed clustering is highly significant ( supplementary fig.

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