marginally significantp = 0.04
The only other pairwise combination between alleles at different loci showing significant LD was between sod1 D and infPhox S, which was marginally significant after Bonferroni correction (p = 0.04; S4 Table ); because these two rare (≤ 2% frequency) alleles co-occur in only three individuals, and because the more common alleles at these loci do not show LD, we dismissed this result as unlikely to be biologically meaningful.