Linkage disequilibrium, persistence of phase and effective population size estimates in Hereford and Braford cattle.

BMC Genet · 2016 · PMC4736111 · PMID 26832943

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highly significantP < 10 -6actually significant

SNP with call rates < 0.98, minor allele frequencies (MAF) < 0.03 and highly significant deviations ( P < 10 -6 ) from Hardy-Weinberg Equilibrium (HWE) were also excluded.

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