These corresponded to 161 of the 175 sites identified within the same genes by this analysis, representing a highly significant overlap with those sites significantly associated with beta lactam resistance by the GWAS (Fisher exact test, OR = 110.2, 95% confidence interval = 58.85–221.83, p < 2.2x10 -16 ).
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Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis.
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