Earliness traits in rapeseed (Brassica napus): SNP loci and candidate genes identified by genome-wide association analysis.

43 The threshold value of −log 10 ( P ) was set as −log 10 0.1/201,817 SNP [ P < 4.96E10-7, −log 10 ( P ) value is approximately equal to 6.3] for identifying true marker–trait associations, which was expressed as the false discovery rate (FDR) test value in the R program 44 ; a true marker–trait association should show a FDR of less than 0.05, and only an FDR of less than 0.01 could meet the criteria for extremely significant association with the traits [ P < 4.96E10-8, −log 10 ( P ) value is approximately equal to 7.3]. 2.5.

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36 Initial flowering in the two environments had a highly significant positive correlation with FFS and MT ( Table 2 ), with phenotypic correlation coefficients of 0.7774** and 0.5698** in JXAU and 0.7053** and 0.5118** in JXIRS, respectively, indicating that early flowering means early maturity, with flowering time a crucial indicator for MT.

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