Integrating a genome-wide association study with a large-scale transcriptome analysis to predict genetic regions influencing the glycaemic index and texture in rice.

Two linkage blocks within the Waxy locus (5034 bp in length) reflected an unusual LD decay within the gene, and the first block contained a highly significant T→G splice variant at 1 765 761 bp (−log( p ) = 13.72, β = −0.74) lying in 5′end of intron 1 (LOC_Os06g04200.1) (Figures 3 a and S4 a,b).

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