Barely Significant
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Evaluating the effect of reference genome divergence on the analysis of empirical RADseq datasets.

Ecol Evol · 2020 · PMC7391306 · PMID 32760550

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a slight trendno p-value reported
Stacks was relatively consistent in mean depth per SNP: There was a slight trend in lower depth with increasing reference genome divergence but it was not substantial.

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