Pairwise intersections of enhancers from cluster 7 and cluster 3 with published FOXA1, FOXA2 and PDX1 ChIP-seq peaks and Fisher’s test showed a highly significant overlap of FOXA ChIP targets in cluster 3 and of PDX1 in cluster 7, respectively (Table 1 ).
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Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data.
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