Enriched-GWAS and Transcriptome Analysis to Refine and Characterize a Major QTL for Anaerobic Germination Tolerance in Rice.

The reduced Manhattan plot showed that signals of highly significant genic SNPs INDELs and PAV were present throughout the 6.0 Mb to 6.7 Mb region, with variants of highest significance found in the proximal part of the AG2 region ( Figure 3 a).

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