For both the BRCA and the GSE50705 data sets, the modules were enriched for known protein interactions in STRING as well as highly significant adjusted p -values for GO Biological Processes, indicating that for most of the genes, WGCNA indeed clustered genes with similar biological functions and on the same pathways.
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Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissues.
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