Haplotype mapping uncovers unexplored variation in wild and domesticated soybean at the major protein locus cqProt-003.

The results using the FarmCPU method and the unimputed dataset indicate a highly significant site associated with protein content located at position 31,649,589 in the Wm82.a4.v1 reference genome (Valliyodan et al. 2019 ) (Table S1); however, a site 17 kb upstream (31,632,556) was detected when using imputed data (Figure S4, Table S1).

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