Genome-Wide Analysis Identifies Candidate Genes Encoding Beak Color of Duck.

The Manhattan plot of beak color showed that a total of 2753 significant SNPs associated with black beak were identified using the threshold of significant p -value (threshold = 0.05/total number of all SNPs = 3.94885 × 10 −09 ), and 1916 extremely significant SNPs were identified using the threshold of significant p -value (threshold = 0.01/total number of all SNPs = 7.8977 × 10 −10 ), most of which were located on chromosome 14 (ALP 14) (2708 SNPs) and ALP 11 (45 SNP) ( Figure 3 , top).

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