Identification of spatially variable genes with graph cuts.

Nat Commun · 2022 · PMC9485129 · PMID 36123336

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highly significantno p-value reported

Importantly, the SV genes reported by scGCO and SPARK demonstrated a highly significant overlap (73.95%, 5466 out of 7391 genes), while spatialDE uniquely reported 4367 SV genes, suggesting that scGCO and SPARK shared a higher reproducibility (Fig. 6d ).

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