Evolutionarily recent retrotransposons contribute to schizophrenia.

nrTEs that yielded nominally significant tests (pval < 0.05) at least for allele and/or genotype frequencies were considered as putatively associated with schizophrenia.

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Then, in order to strengthen the potential association between genomic markers (nrTEs) and the investigated trait (schizophrenia), in addition to performing standard allele frequency-based association methods, we also applied haplotype-based analyses, which, as expected, yielded [ 78 ] highly significant results with a magnitude pval ≤ 10 −5 .

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