The overall variance of the levels of a protein was more concordant between matching assays on the two platforms where cis pQTLs were detected on both platforms (Spearman correlation 0.57 for pQTLs on both platforms, otherwise below 0.28) but did not show a clear trend for individual platforms depending on the presence or absence of cis pQTLs on that platform (Extended Data Fig. 2 ).
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Large-scale plasma proteomics comparisons through genetics and disease associations.
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