Barely Significant
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Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity.

PLoS Comput Biol · 2023 · PMC10621967 · PMID 37871126

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moderately significantp = 0.04actually significant
Additionally, whilst Refphase’s ability to infer SCNA events at low tumour purities exceeds that of single-sample copy number calling methods ( Fig 4F ), even with Refphase, we observe a moderately significant association between the range of purities within a tumour (‘Tumour Purity Difference’) and the degree of SCNA subclonality (LME coefficient = 0.28, LME ANOVA p = 0.04, adjusted, S9B Fig ), indicating that tumour purity may interfere with the estimation of SCNA clonality.

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