highly significant− log P = 14.97
The eGWAS peak SNP was detected approximately 9 kb upstream of OsENT1 with a highly significant signal (− log P = 14.97) and was located within 50 kb of the GWAS peak SNP responsible for NRT_L (Fig. 3 A).
The eGWAS peak SNP was detected approximately 9 kb upstream of OsENT1 with a highly significant signal (− log P = 14.97) and was located within 50 kb of the GWAS peak SNP responsible for NRT_L (Fig. 3 A).
Furthermore, four significant genes ( LOC_Os01g04630 , LOC_Os03g02750 , LOC_Os02g54580 , and LOC_Os12g32536 ) and two weakly significant (FDR-adjusted P -value between 5% and 10%) genomic regions associated with at least one root phenotype were identified using TWAS and GWAS, respectively.