We tried to identify genetic factors associated with the number of TE genes and lincRNAs expressed using genome-wide association study (GWAS) but could not see any clear association, except for 1 nearly significant peak on chromosome 2 near the XERICO gene (At2g04240), encoding a protein with a zinc finger domain ( Supplemental Fig.
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Population-level annotation of lncRNAs in Arabidopsis reveals extensive expression variation associated with transposable element-like silencing.
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