In contrast, in Clade II, there is a clear trend of significant down-regulation of gene expression at 13-dai in resistant roots versus susceptible where gene expression remains largely unchanged from baseline levels.
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Transcriptome profiling and RNA-Seq SNP analysis of reniform nematode (<i>Rotylenchulus reniformis</i>) resistant cotton (<i>Gossypium hirsutum</i>) identifies activated defense pathways and candidate resistance genes.
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