Defining loci in restriction-based reduced representation genomic data from nonmodel species: sources of bias and diagnostics for optimal clustering.

Biomed Res Int · 2014 · PMC4095725 · PMID 25057498

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The simulated data for all three species showed a trend with increasing mismatch thresholds from 2% to 14% whereby single haplotype clusters (putative homozygous loci) decreased and two-haplotype clusters (putative heterozygous loci) increased (Figures 3(a) – 3(c) ).

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