An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees.

While for the MrBayes mapping a clear trend toward shorter inner branch lengths is observable, the NNI-transitive mapping leads to branch length changes that are as pronounced as the worst case for inner-default (i.e., v S B , the branch that is removed and remapped) and that vary in both directions.

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