Pathway enrichment analyses 38 for the genes in this community showed highly significant enrichments for oestrogen response, TNFα signalling, epithelial–mesenchymal transition and the p53 pathway (Fig. 3f ; q -value < 1e-8).
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Single-cell transcriptomics reveals multi-step adaptations to endocrine therapy.
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These results further corroborate our previous observations that these genes tend to be controlled by the same GRNs, and showed a trend of higher expression in luminal tumours with longer latency of recurrence (A vs B; Supplementary Fig. 8d ).