GWAS: Fast-forwarding gene identification and characterization in temperate Cereals: lessons from Barley - A review.

Here, we propose to consider all SNPs above the threshold (in some cases all SNPs) in such analysis to check which one can explain more natural phenotypic variation since it is known that not all of the highly associated SNPs having a highly significant impact on the phenotype.

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There is a clear trend of using GenStat for QTL and candidate-gene identification because it is one of the earliest software to do these analyses and has many features that are not available in other software.

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