borderline significantp < 10E-05
Two CpG-sites were borderline significant in HD – cg18222192 (MIR708)( p < 10E-05, p FDR = 5.81E-02) and cg01299774 (MIR4456)(p < 10E-06, p FDR = 5.81E-02).
Two CpG-sites were borderline significant in HD – cg18222192 (MIR708)( p < 10E-05, p FDR = 5.81E-02) and cg01299774 (MIR4456)(p < 10E-06, p FDR = 5.81E-02).
Subsequently, binomial tests were performed in R using the function ‘binom.test’, contrasting for each gene the number of nominally significant CpG-sites to the total number of probes annotated to each gene transcript not taking the direction of the methylation change into account.