Effect of genomic selection and genotyping strategy on estimation of variance components in animal models using different relationship matrices.

In addition, we showed that A-AM also overestimates the genetic variance in populations under genomic selection, although in our results this was clearly significant only in the scenario with the strongest genomic selection.

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The estimates of genetic variance by H-AM and A-AM were similar and did not differ significantly for males, whereas for females the H-AM estimate of genetic variance was more than 5 times larger than the A-AM estimate, which represents a highly significant difference (Table 3 ).

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