nominally significantp < 1e−4
When quantifying the number of samples that are not heterozygous for a known eQTL but still show allelic imbalance, gene-level haplotypic expression levels were excluded for a sample if the individual was heterozygous for a top significant eQTL or a nominally significant (permutation p < 1e−4) independent eQTL in any of the 49 tissues.