A significant trend (positive or negative) indicates phylogenetic dependence for that tree ( Garland 1992 ; Garland et al. 1992 ; Díaz-Uriarte and Garland 1998 ; Freckleton and Harvey 2006 ; Cooper, Thomas, FitzJohn, et al. 2016 ), and we removed those trees from our analysis.
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Special Care Is Needed in Applying Phylogenetic Comparative Methods to Gene Trees with Speciation and Duplication Nodes.
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