Pathobiology and dysbiosis of the respiratory and intestinal microbiota in 14 months old Golden Syrian hamsters infected with SARS-CoV-2.

Alpha diversity (observed number of amplicon sequence variants (ASV’s)) and Shannon diversity showed a trend towards an increased number of ASVs and diversity following SARS2 challenge, particularly in the FLUAV-SARS2 group; however, no significant differences were observed among the SARS2 challenged groups and mock when dpc were combined ( Fig 3A ).

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