Neonates exposed to HIV but uninfected exhibit an altered gut microbiota and inflammation associated with impaired breast milk antibody function.

However, these differences did not reach statistical significance after adjustment for multiple testing (Adj p = 0.057 IgG1 and 0.051 for IgG3).

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Analysis of phage lifestyles predicted using VIBRANT showed a trend towards a lower number of lytic and lysogenic phages in nHEU compared to nHU, although the difference was not statistically significant (Fig. 3 I–J).

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