Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content.

Also, in accordance with the observation that cytosine residues of TEs close to highly expressed genes tend to be less methylated and that expressed TEs exhibit a clear trend toward hypomethylation, we found that about 14% of expressed TEs are close to genes (an over six-fold enrichment with respect to the total fraction of gene-proximal TEs).

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A marked trend toward hypomethylation is observed for TEs located within a 1 kb distance from expressed genes, rather than segregated in TE-rich regions of the genome.

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