Barely Significant
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highly significant

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p=0.09

Listed by Hankins (2013)

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highly significantp -value < 1.0 × 10 −160.0× alphaqualifiedgold
For a random protein set of comparable size, the expected number of edges was 8, whereas the observed network contained 44 interactions, resulting in a highly significant PPI enrichment p -value < 1.0 × 10 −16 .
highly significantP -values <10 -160.0× alphaqualifiedgold
The correlation between the distance of GO groups in the 0.001 cutoff co-evolution network (that is, their evolutionary distance) and their distance in the corresponding GO ontology network (that is, their functional distance) is highly significant: 0.38 for cellular component, 0.16 for biological process and 0.43 for molecular function (all three with P -values <10 -16 ; a similar trend is observed using the 0.01 cutoff network).
highly significantp < 1.0E-160.0× alphaqualifiedgold
The highly significant protein–protein interaction network ( p < 1.0E-16) was created with 378 nodes, 810 edges, 4.29 average node degree, and 0.357 average local clustering coefficient ( Figure 13A ).
highly significantp < 10 −160.0× alphaqualifiedgold
To validate the biological significance of this manually compiled pathway, we applied STRING protein–protein interaction enrichment analysis, which confirmed highly significant interaction for the RORC consensus pathway (expected number of edges: 11, observed number of edges: 83, enrichment p < 10 −16 ).
highly significantP -value < 10 -160.0× alphaqualifiedgold
The C > A mutations observed were associated with highly significant sequence-selectivity, being marked by an excess at CpCpT (NGCII082, odds ratio (OR) = 3.2, P -value < 10 -16 , χ 2 test) or TpCpA sites (NGCII092, OR = 1.7, P -value < 10 -16 , χ 2 test) and extensions of these motifs (Materials and methods; Note 6 and Figure S6 in Additional file 1 and Table S14 in Additional file 6 ).
highly significantp -value = 1 × 10−160.0× alphaqualifiedgold
As reported in the Results section, the resulting network showed a highly significant protein–protein interaction enrichment ( p -value = 1 × 10−16), indicating that the observed interactions are far more frequent than expected for a random set of proteins of comparable size.
highly significantp -value < 1e-160.0× alphaqualifiedgold
These results show that all four topological measures provide highly significant ( p -value < 1e-16) enrichment in pathogen targets, with betweenness and clustering coefficient displaying highest enrichment, thereby demonstrating the added value of incorporating PPI data into inferred networks for a generalizable approach to identify target regulatory nodes within networks.