Barely Significant
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highly significant

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p=0.09

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highly significantP ≈ 7.7 × 10 –170.0× alphaqualifiedgold
For each overlap, the hypergeometric test was applied, and all overlaps were found to be highly significant ( Supplemental Figure 7B ; hypergeometric test P values from proximal to distal bins, DMRs: P ≈ 7.7 × 10 –17 , P ≈ 2.5 × 10 –33 , P ≈ 1.8 × 10 –16 , P ≈ 5.1 × 10 –13 ; DARs: P ≈ 4.1 × 10 –47 , P ≈ 1.3 × 10 –64 , P ≈ 1.2 × 10 –33 , P ≈ 7.9 × 10 –36 ).
highly significantp = 8.592 ×10 -170.0× alphaqualifiedgold
By contrast, the global expression pattern showed a highly significant association with post conception age (Kruskal Wallis test, p = 8.592 ×10 -17 , Fig. 1b ) demonstrating a more prominent contribution of the developmental stage to the observed changes in gene expression than differences attributed to regional variations.
highly significantP -values <10 -160.0× alphaqualifiedgold
The correlation between the distance of GO groups in the 0.001 cutoff co-evolution network (that is, their evolutionary distance) and their distance in the corresponding GO ontology network (that is, their functional distance) is highly significant: 0.38 for cellular component, 0.16 for biological process and 0.43 for molecular function (all three with P -values <10 -16 ; a similar trend is observed using the 0.01 cutoff network).
highly significantp-value = 1.0e-160.0× alphaqualifiedgold
Protein-protein interaction (PPI) analysis using STRING ( Szklarczyk et al., 2019 ) revealed that the hub proteins, including MSN, EZR, C1qa, a key component of the complement cascade, and GFAP, belong to a PPI network with highly significant interactions (p-value = 1.0e-16) ( Figure 4 B).
highly significantp < 1.0 × 10 −160.0× alphaqualifiedgold
DAPs Are Involved in Wound Repair and Blood Coagulation Are Associated with Hydration Protein–protein interaction analyses of DAPs using STRING [ 19 ] resulted in a highly significant clustering (PPI enrichment value of p < 1.0 × 10 −16 ) consisting of 34 nodes and 126 edges ( Figure 2 ).
highly significantp -value < 1e-160.0× alphaqualifiedgold
These results show that all four topological measures provide highly significant ( p -value < 1e-16) enrichment in pathogen targets, with betweenness and clustering coefficient displaying highest enrichment, thereby demonstrating the added value of incorporating PPI data into inferred networks for a generalizable approach to identify target regulatory nodes within networks.
highly significantP -value < 10 -160.0× alphaqualifiedgold
The C > A mutations observed were associated with highly significant sequence-selectivity, being marked by an excess at CpCpT (NGCII082, odds ratio (OR) = 3.2, P -value < 10 -16 , χ 2 test) or TpCpA sites (NGCII092, OR = 1.7, P -value < 10 -16 , χ 2 test) and extensions of these motifs (Materials and methods; Note 6 and Figure S6 in Additional file 1 and Table S14 in Additional file 6 ).