Barely Significant

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highly significantP < 1 × 10 −220.0× alphaqualifiedgold
Strikingly, we found that 41.9% (1328 out of 3173 sites) were edited at significantly higher levels in the brain than in non-brain tissues ( P < 0.05, Wilcoxon test), which represented a highly significant enrichment for brain-specific editing compared to various negative controls (see ‘Materials and Methods’ section) ( P < 1 × 10 −22 , Fisher’s test) (Figure 5H and Supplementary File S1 ).
highly significantp = 1.38 × 10 − 220.0× alphaqualifiedgold
To validate our networks, we determined whether our NBIA-containing modules are composed of the same genes as those in publicly available caudate nucleus networks ( Oldham et al., 2008 ) and identified a highly significant overlap between these two basal ganglia networks (e.g. our brown module vs their M16C module: p = 1.38 × 10 − 22 ; our green module vs their M9C module: p = 2.69 × 10 − 166 ).
highly significantp = 3.2 × 10 −220.0× alphaqualifiedgold
Analyzing the same brain regions from another group of mice using our custom array platform revealed another highly significant CpG to be hypomethylated in the Q175 group (probe cg12389415 on the custom array, mouse chr5:34795955) also within the Htt locus (meta-analysis p = 3.2 × 10 −22 ; Supplementary Fig. 25 ).